HsaEX0017103 @ hg19
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:26977]
Coordinates
chr10:125622130-125639825:-
Coord C1 exon
chr10:125639727-125639825
Coord A exon
chr10:125623371-125623440
Coord C2 exon
chr10:125622130-125622239
Length
70 bp
Sequences
Splice sites
3' ss Seq
CAAGGCCCTCTGGTGGATACCAG
3' ss Score
-8.59
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTAAACACAGCAACAAAAAAGTTATGAGAACCAAGAGCTCTGAGAAGGCTGCCAACGATGATCACAGTGTCCGTGTGGCCCGTGAAGATGTCAGAGAGA
Seq A exon
CAGTGACCGCTGGGGACTGTGAGCTCCAAGAGGCGAATGGCATCCGACAGCAGGGGCCCATTGTCCTGAG
Seq C2 exon
GTTGCCCACCTCTTGGTCTGGAAACCTTAAAAATCACAGACTTCCAGCTCCATGCCTCCACGGTGAAGCGCTATGGCCTGGGGGCACATCGAGGGAGACTCAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=1.000 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075420=F5_F8_type_C=PU(14.9=56.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCTCTGAGAAGGCTGC
R:
GTTGAGTCTCCCTCGATGTGC
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)