HsaEX0017110 @ hg19
Exon Skipping
Gene
ENSG00000203710 | CR1
Description
complement component (3b/4b) receptor 1 (Knops blood group) [Source:HGNC Symbol;Acc:2334]
Coordinates
chr1:207803862-207813992:+
Coord C1 exon
chr1:207803862-207803966
Coord A exon
chr1:207811033-207811193
Coord C2 exon
chr1:207812742-207813992
Length
161 bp
Sequences
Splice sites
3' ss Seq
CATCATCCCTTCTTCCTCAGGTT
3' ss Score
10.25
5' ss Seq
CTAGTGGGT
5' ss Score
1.46
Exon sequences
Seq C1 exon
CAATAATGCACATGAAAACCCTAAAGAAGTGGCTATCCATTTACATTCTCAAGGAGGCAGCAGCGTTCATCCCCGAACTCTGCAAACAAATGAAGAAAATAGCAG
Seq A exon
GTTTGGCAGGGCAATGATCATCTGTGGGGCCAGGTACCCATACACTATCATTAACATATACTTCAATAGGATTATCCATCCATGTGACTGGTGTTTCCATCTCCGCGGTGGCGCTTTTCTTTGCATCTCCGATGGGTTCATCGTAGATCTTCAAATGTCTA
Seq C2 exon
GGTCCTTCCTTGACAAAGTACTATACAGCTGAAGAACATCTCGAATACAATTTTGGTGGGAAAGGAGCCAATTGATTTCAACAGAATCAGATCTGAGCTTCATAAAGTCTTTGAAGTGACTTCACAGAGACGCAGACATGTGCACTTGAAGATGCTGCCCCTTCCCTGGTACCTAGCAAAGCTCCTGCCTCTTTGTGTGCGTCACTGTGAAACCCCCACCCTTCTGCCTCGTGCTAAACGCACACAGTATCTAGTCAGGGGAAAAGACTGCATTTAGGAGATAGAAAATAGTTTGGATTACTTAAAGGAATAAGGTGTTGCCTGGAATTTCTGGTTTGTAAGGTGGTCACTGTTCTTTTTTAAAATATTTGTAATATGGAATGGGCTCAGTAAGAAGAGCTTGGAAAATGCAGAAAGTTATGAAAAATAAGTCACTTATAATTATGCTACCTACTGATAACCACTCCTAATATTTTGATTCATTTTCTGCCTATCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203710-'51-47,'51-46,52-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.000 C2=0.595
Domain overlap (PFAM):
C1:
PF0103415=Syndecan=PD(32.1=47.4)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTCAAGGAGGCAGCAGC
R:
AGGCAGGAGCTTTGCTAGGTA
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)