HsaEX0017391 @ hg38
Exon Skipping
Gene
ENSG00000116791 | CRYZ
Description
crystallin zeta [Source:HGNC Symbol;Acc:HGNC:2419]
Coordinates
chr1:74724711-74733030:-
Coord C1 exon
chr1:74732956-74733030
Coord A exon
chr1:74730382-74730420
Coord C2 exon
chr1:74724711-74724834
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATCTCCTTTGACAGGCT
3' ss Score
7.43
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AGAAGGTGTGGCAGTCCTCATTTCTGTGGAATCTGAAGAAGCCCACGCAGATTTTAATTCCCACTCTAGATTCTG
Seq A exon
GCTTCATCGTTATGAAGCATATGATGATCCCGTGGATAG
Seq C2 exon
TATCTAGATCACCATGGCGACTGGACAGAAGTTGATGAGAGCTGTTAGAGTTTTTGAATTTGGTGGGCCAGAAGTCCTGAAATTGCGATCAGATATTGCAGTACCGATTCCAAAAGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791_MULTIEX2-2/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(2.1=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAAGCCCACGCAGATT
R:
ATTTCAGGACTTCTGGCCCAC
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development