HsaEX0017604 @ hg19
Exon Skipping
Gene
ENSG00000110925 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006]
Coordinates
chr12:51470194-51476477:-
Coord C1 exon
chr12:51476304-51476477
Coord A exon
chr12:51475211-51475279
Coord C2 exon
chr12:51470194-51470430
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTTTTTACCTGCATTCCTAGGTG
3' ss Score
8.34
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCCCAATTACGCAGCCAACTGCCACCCGTCCCTTTTAGTGCTGTGGTCTTGATTCATCCTTTTAAAGGGGTTGAGAGTGGCAGTGTGACACACAAACTGTTCTTCAGAATGAAATGCTAGAAGTTATCCCCACAAGACAACACTGTCCCCTTGTCCTGCAGTTTTCAGTTCAAG
Seq A exon
GTGCTAAAACTTACAAGTGTATCTCTTGAACACAGGCATTGATCCTCTACCAATGAATAATTGAGAGAG
Seq C2 exon
AATCCTAATGTACCTGGCTAGCTGGTGGTGAGTAGGGGCTTTGGGGCCAACTTGGTGGGCTCCCCAAGGAAACCCCTTTGAAACCAATGGATGCATTCACGGGCTCGGGTCTCAAGAGGAAGTTTGATGATGTGGATGTGGGCTCATCAGTTTCCAACTCAGATGATGAGATCTCCAGCAGTGATAGTGCTGACAGCTGCGACAGCCTCAATCCTCCTACCACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.608
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCCCTTTTAGTGCTGTGG
R:
TACTCACCACCAGCTAGCCAG
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)