HsaEX0017730 @ hg19
Exon Skipping
Gene
ENSG00000219665 | CTD-2006C1.2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F2Z2P1]
Coordinates
chr19:12098432-12112637:+
Coord C1 exon
chr19:12098432-12098638
Coord A exon
chr19:12100984-12101196
Coord C2 exon
chr19:12112589-12112637
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTATACTGCAACAGCTT
3' ss Score
4.46
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
AATCCGCCGGAAGGAGGGCGCAGCATTGCCGGTCTTCTCATTGCCTGGCTGCTAGAGGAAACCCGAAGTCGGGATTCTTTCTTTCCTGCTCTGAGAGGGACCAGGTCCCTCCTCCGTAGCTTTTGTCTCTCTATTGCCTGCGCCGTGTCCTGGACTGCTCACGGGAGTTCTGCAGGAGACGCCGGAATATCTGGAAGCTGAAAAATG
Seq A exon
CTTGTGCCCTCTGTCTCTTGCCTTGGCACCTGGGTGGCTTGCTGCCCACAACCCCGTGTCTAAAAATACAAAAATTAGCTGCGCATGGTGGTGGGTACCAGTAATCCCAGCTACTCCGGAGGCTGAGGCAGGAGGATCGCTTGAACCCGGGAGATGAAGGTTACAGTGTTATGAAAGACCTTGGCGGAGGGAAACAACCCCAGGAAGCCTCGA
Seq C2 exon
GAAATAAATGGAAAGACCAGAATATTGAAGATCACTACAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219665-'0-2,'0-0,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATTGCCGGTCTTCTCAT
R:
TCTGTAGTGATCTTCAATATTCTGGT
Band lengths:
228-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)