HsaEX0017779 @ hg19
Exon Skipping
Gene
ENSG00000249898 | CTD-2541M15.1
Description
NA
Coordinates
chr8:6484672-6565721:-
Coord C1 exon
chr8:6565662-6565721
Coord A exon
chr8:6527510-6527761
Coord C2 exon
chr8:6484672-6484831
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTGAATTCTTTTACTTCTAGGCA
3' ss Score
8.59
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCTGGGCCGGCTGCGGACGCGGGAAGGGAGGTGGTGGCGACTGACGGAACTGGGTGAAG
Seq A exon
GCAGCAGTCTGTCAACAACTATGGCATCCAGCTGGTCAGAAAGACTAGAGGATTTGACATTTTGCGGCTGTTCTCTAGAACCAAAGAAATGAGAACCTCTTGGTAAAATCCGCTGGTCCAGGAGTTATTATCTCCTGGATTATCTGCCAAAGAAATTATCTGCCAAAATTACAATGTAAAACTGAAGAAGACAACCGATAACTCAGTTAAAATTTTGGAAAAATACAAAGAAACTGTGACTGGGGAGAAATG
Seq C2 exon
CTTCTGCAGATGGCCTCCCCTCTCTGCGACTGGTTCCTTATCGAGGCAATGGAGATGTGGACTGCGGTGACTGATCAAGCCTCACATATCTACTGAATCAGGAAGCCCGAAGGCCTGAGGCCTCCCGAGTGGCCCCATGGGAGCGTCGTGCATTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGGAAGGGAGGTG
R:
CAGAAAAATGCACGACGCTCC
Band lengths:
204-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)