HsaEX0018616 @ hg19
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172300033-172305327:+
Coord C1 exon
chr2:172300033-172300123
Coord A exon
chr2:172303896-172304013
Coord C2 exon
chr2:172305191-172305327
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTCTTTTTTGAGATG
3' ss Score
4.36
5' ss Seq
TAGGCAAGC
5' ss Score
1.14
Exon sequences
Seq C1 exon
TGTTGCATCTGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAATCAGAAAAAATAGAGGATGCTTTATTATGGGAATGCCCAGTG
Seq A exon
ATGGAGTCTTCTGTCGCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACCGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAG
Seq C2 exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCATCTGAGCCAAGAAA
R:
AGGTGCAAGATATATTTTCTCAAGGA
Band lengths:
214-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)