HsaEX0018922 @ hg19
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135537826-135545788:-
Coord C1 exon
chr9:135545247-135545788
Coord A exon
chr9:135544957-135545060
Coord C2 exon
chr9:135537826-135538082
Length
104 bp
Sequences
Splice sites
3' ss Seq
AACCGGAACACCACCCGCAGGGA
3' ss Score
3.1
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTGCCCAGGGATTGAGCTCCAGAGCCTGTTAGGGAGCTACCCAGACAGGCTTTAGTTCCTAAAGTGCTGAGGAAACGCACGGGGCGGTAAAGGGGAGGCTCGTCGGTGAGATGGCGCCGGATCTCGCTTCTCAGAGGCATTCAGAGAGCTTCCCCAGCGTGAACTCTCGGCCGAATGTAATTTTGCCAGGCCGCGAGGGACGCAGAGAGGGGCTGCCACCAGGCGGGGGCACGCGCGGTAGTCTTGTCCCTACCCGCCCGGTGCCGCCGTCCCCGGCTCCCCTCGGGACGAGTCCGTACAGCTGGAGCCGTTCCGGACCCGGAAGGGGCGGTGGCGCAGGGTCCTCGCGCGTCCCACGTGGGGTCCCGGGCCCAGCAGTCTGCGCACCGGGCTCGCTGCTGCACCACGCGTCACCCACGCAGACCATGGCAGCCGCCGACGGTTCGCTCTTCGACAACCCCAGGACGTTCTCCAGACGTCCCCCAGCCCAGGCGAGTCGG
Seq A exon
GGATGCGCCTGGAAGCGGGGAGTGGAGCGGTGTGGAGGGGCGGGGAGCTGGCTCCTGCGCCTAGAAAAGTAAAGGAAGGAATTAGAGGCTGTTTCCCGTGGAAG
Seq C2 exon
CAAGCAAAGGCTACGAAAAGAAAATACCAAGCGTCCAGTGAGGCTCCCCCAGCGAAACGGAGGAACGAAACTTCATTTCTCCCAGCCAAGAAAACTAGTGTTAAAGAAACTCAGAGGACTTTTAAGGGGAACGCACAAAAAATGTTTTCTCCAAAGAAGCATTCGGTTAGCACAAGTGATAGAAACCAGGAGGAGAGACAGTGCATTAAGACTTCATCACTGTTTAAAAACAACCCTGACATTCCAGAACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.388 C2=0.970
Domain overlap (PFAM):
C1:
PF077668=LETM1=PU(1.6=1.5)
A:
PF104814=CENP-F_N=PU(11.4=29.4),PF077668=LETM1=PU(3.2=11.8)
C2:
PF104814=CENP-F_N=PD(86.4=88.4),PF077668=LETM1=FE(68.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGACGTTCTCCAGACGTC
R:
ATGCACTGTCTCTCCTCCTGG
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)