HsaEX0019443 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137172356-137206712:-
Coord C1 exon
chr7:137206612-137206712
Coord A exon
chr7:137178529-137178582
Coord C2 exon
chr7:137172356-137172435
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTCTGTCATTTCAGCTA
3' ss Score
7.5
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCCCCAGTCTGTCCCAGATCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTATGACAAGGAGAAACTCCGAGAAGCTT
Seq A exon
CTATTTCAGACTGGTTAAGAACCATTGCTGGGGAACTAGTGCAGTCATTTGGAG
Seq C2 exon
CGATACCTCTGGGTATTCTAGTTGTGCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'33-33,'33-32,34-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTGTCCCAGATCGTCT
R:
CCAAATCACAGTCTCCACGCA
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)