HsaEX0019445 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137363303-137374748:-
Coord C1 exon
chr7:137374640-137374748
Coord A exon
chr7:137372489-137372616
Coord C2 exon
chr7:137363303-137363398
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTTCTTTGATTTTAGGTA
3' ss Score
11.58
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GAAAGCAATCTCCCGGGCAGGCCTCCAGCATCTGGCTCCTGCACATCCCCTCAGCCTTCCTGTGGCAAATGGTCCAGCCAAGGAGCCCAGAGCGACTTTGGACTGGAGT
Seq A exon
GTACCCCATCTTGGAGGTCTGTTGAAAGTATGGCATGACACGAAACACTTAGCTGACATCTAACAATGGTGGGAAAACCGAAAGCCCTTCCTTGAGACAGTCCATCTGAGGGCTTAGAGATCTGATGT
Seq C2 exon
GAGAATGCCGTGAATGGAGAACACCTGTGGCTGGAGACCAACGTCTCGGGAGACCTCTGCTACCTTGGAGAGGAGAACTGCCAAGTCAGATTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'7-10,'7-9,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.9=75.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCAATCTCCCGGGCAG
R:
TGCAAATCTGACTTGGCAGTTCT
Band lengths:
205-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)