HsaEX0019730 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47910513-47917020:+
Coord C1 exon
chr21:47910513-47910632
Coord A exon
chr21:47914042-47914146
Coord C2 exon
chr21:47916901-47917020
Length
105 bp
Sequences
Splice sites
3' ss Seq
AATAAATACTTCCTTAATAGCAA
3' ss Score
3.71
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAATAGACCCATCTCTGCAAGCAGAGAATAGAATTCCTGGGCCCTCACAAACCACGGCCGCTGCACCCAAGCAGCAGAAGTCTCGGCCCACCGCCTCGAGGGATGAGCGCTTCCGGTCAG
Seq A exon
CAAATATTCAGCCAATGTTCATATGGCTTTTGCTCGTATGGCTTCTAAGGAACAAGTTTATTTGGACCCAGGATTCAAATAAGAGCTACACATTGCAGTTGGTTG
Seq C2 exon
ATGTCCACACTGAAGCCGTGCAAGCAGCTTTGGCCAAATACAAAGAGAGGAAGATGCCTATGCCTTCGAAGAGACGTTCTGTCCTTGTGCATTCGTCTGTGGAAACCTACACCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=0.028 C2=0.978
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(34.8=100),PF051207=GvpG=PD(11.5=14.6)
A:
PF064646=DMAP_binding=PD(4.4=11.1),PF064646=DMAP_binding=PU(29.3=33.3)
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF064646=DMAP_binding=PD(84.8=68.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCCATCTCTGCAAGCAG
R:
CTGGAGGGGTGTAGGTTTCCA
Band lengths:
237-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)