HsaEX0019750 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51034507-51054102:+
Coord C1 exon
chr12:51034507-51034635
Coord A exon
chr12:51048794-51048823
Coord C2 exon
chr12:51053977-51054102
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTATTTGCTTTTTTATTTAGAAT
3' ss Score
8.4
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAACTGATTCAGCAGTACAGAAAGAACTTAGAAACCAGACACCTGCTCCATCTGCAGCTCAAACTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGAGCCAGGGATGAACGATATCGATCAG
Seq A exon
AATTCTCTCTTGTCAGAATTTACTCTGAAG
Seq C2 exon
ATATCCACACAGAAGCAGTTCAGGCTGCACTGGCAAAGCATAAAGAACAGAAGATGGCTTTGCCCATGCCAACCAAAAGGCGATCCACATTTGTTCAGTCTCCTGCAGATGCCTGCACACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.000 C2=0.961
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(35.8=100),PF051207=GvpG=PD(14.8=18.2)
A:
PF064646=DMAP_binding=FE(7.7=100)
C2:
PF064646=DMAP_binding=PD(25.0=69.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCTGCAGCTCAAACT
R:
CAGCCTGAACTGCTTCTGTGT
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)