HsaEX0020122 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225155133-225161855:+
Coord C1 exon
chr1:225155133-225155285
Coord A exon
chr1:225156461-225156576
Coord C2 exon
chr1:225161793-225161855
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCTTTATTTTGTAGGTT
3' ss Score
11.65
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
AAACCTTTGGAAGATGATGGAGAATTTGTTTATTGCCTTCCTCGGAAAAGTCCTAAATCCCTTTACAATCCATATGATCTTCAGGTAGTATCGGCTCATACTGCTAAACATTGCAAAGAATTTTGGGTTATTACTGCTTCATTTATCTCAAAG
Seq A exon
GTTATTAATATAGTTGGTAGTGTAAAGGAAGTAGAACTCATACCTACTTTGGAATGGCTATCAGAAAGAAGACATTACTATTTATTACGGCAATTCAAGATATTTTCTGATTTCCG
Seq C2 exon
AATGAATAAAGCATTTGTTACCTGGAAATTGAATGTTAAAAGAATTAAGACAGAGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'13-25,'13-23,17-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGGAAGATGATGGAGAA
R:
CTGCTCTTCTCTGTCTTAATTCTTT
Band lengths:
214-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)