HsaEX0020129 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225394670-225428524:+
Coord C1 exon
chr1:225394670-225394922
Coord A exon
chr1:225418775-225418853
Coord C2 exon
chr1:225428295-225428524
Length
79 bp
Sequences
Splice sites
3' ss Seq
AATACTCTTTCCTTTTTAAGGTG
3' ss Score
11.13
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GATCCTGTTGATCTGGGATGGGAACCTTATGTTAAGTCATGGCTTCTGAAAACTTCTAAAATTATAAGTCAATCAGGAGTGGATTGTCTTGAATTCATGATTAAAAATAGTGTCACAGACGGACTACAATTTATAAGGAATCGTCAGAAATTTCAGCCATATCCTATGGAGGACATAACAGTCGTCATAACCCTCTGCAGAATTCTTGATGCTTTCTTTGACTTCATGGGTAAAAATGGAGGATTTGAACAAA
Seq A exon
GTGATGATTTGAATGACACGTCATCTAAGGAGGCAAATTCCCAAAGAGAGTCTGTCACATTCAAGGATATAGAAAAGAG
Seq C2 exon
GGATGAAAATACATGGTATCCAGAGAAAAATCCTGATAAATTAACAAAAATTATTCAAAAGCTTTTTGTGTTTGCCTTTACTTGGGCATTTGGAGGAGCTTTAAACCGTGAAGATGAACACAGAGAAAATATACCATTTTGTCCCAGTCTTGAACCTGATTCTCTTGCAAAAGTAACATACGATTTTGACAAACTTGTTCATGAATTATTTGGAAACAGTTCACAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'65-71,'65-70,66-71
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.648 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGTCATAACCCTCTGCAGA
R:
AAGCTCCTCCAAATGCCCAAG
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)