HsaEX0020154 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225147855-225152311:+
Coord C1 exon
chr1:225147855-225148004
Coord A exon
chr1:225148799-225149031
Coord C2 exon
chr1:225152181-225152311
Length
233 bp
Sequences
Splice sites
3' ss Seq
TGCTGGTGGACTTGTTCTAGAGT
3' ss Score
3.73
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATTACCTTAGAGAAAGTATAATTCAACAACATATGGTTTCTCCAGAGCCAGCTTCCCTTAAGGAGAAAGGGAAGTCAAGGAGAAAAAAGGATCAAACTCATGCTTGTCCAAATGTTAGGAAAGCCAGGCCTGTGTCCTATGATAGAACAG
Seq A exon
AGTCTCTCCCCTTTGCTGGCTTCGAAGAAGCAAGCTGCTATGATTCCAATCACAAAGAAATGAATTCTTCTTACAACCTGAGGGAGCTTGGAAGCAGATCTTTTCCCAATAGAGCCTCCAAATGAGAATCCATTCCCAAGCAACACCTCGATTACAGCCTTTGAGACTTTAAGCAGAGGATCCGTTAAGCTGTATCCAGACTCCTGACCCACAGAAACTGTGAGATAGTAAAT
Seq C2 exon
AACCAAAAGATGATGATGTGATAAGAAATATTATTAGGCTACGAGAAAAGCTTGGTTGGCAAACTATATTACCGCAGCACAGTTTGAAATACGGAAGCTCCAAAATTGCAATTCAGAAGATTACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX4-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.610 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTCCAGAGCCAGCTTC
R:
TCTTCTGAATTGCAATTTTGGAGCT
Band lengths:
236-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)