HsaEX0021881 @ hg19
Exon Skipping
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:14129]
Coordinates
chr6:31860603-31864293:-
Coord C1 exon
chr6:31864040-31864293
Coord A exon
chr6:31861139-31861439
Coord C2 exon
chr6:31860603-31860687
Length
301 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTCACCTGGGCAGCAT
3' ss Score
7.63
5' ss Seq
TGGGTAACA
5' ss Score
3.35
Exon sequences
Seq C1 exon
GCCATGCCACAAAGTCATTCCCCTCTTCCCCCAGCAAGGGGGGTTCCTGTCCTAGCCGGGCCAAGATGTCAATGACAGGGGCGGGAAAATCACCTCCATCTGTCCAGAGTTTGGCTATGAGGCTACTGAGTATGCCAGGAGCCCAGGGAGCTGCAGCAGCAGGGTCTGAACCCCCTCCAGCCACCACGAGCCCAGAGGGACAGCCCAAGGTCCACCGAGCCCGCAAAACCATGTCCAAACCAGGAAATGGACAG
Seq A exon
CATACCAAGACCCCATCTCTAAAAGAAGTTTAAAAGAATGTTTCAAAGGCCAGGCCCAGTGACTCACGCCTGTAATCCCGTACTTTCTGGGGAGGATCACTTGACACCAGGAGTTCAAGACCAGCCTGGGCAACATGGCAAGACCTCTTCTCTACCAAAAAAAAAAATTAAGAAGACATTAGTTAGGCATTGTGACATGTGCCTGTAATCCCAGCTTCCCAGGAAGCTGAGGCAGGAGAATGGCTTGAGTCCAGTTCGAGGCTGAAGTGAGCCATAGTCATGCCACTGCACTCCATCCTGG
Seq C2 exon
CCCCCGGTCCCTGAGAAGCGGCCCCCTGAAATACAGCATTTCCGCATGAGTGATGATGTCCACTCACTGGGAAAGGTGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.992
Domain overlap (PFAM):
C1:
PF031538=TFIIA=PU(36.4=97.6)
A:
NO
C2:
PF031538=TFIIA=FE(12.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACAAAGTCATTCCCCTC
R:
TGAGGTCACCTTTCCCAGTGA
Band lengths:
334-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)