HsaEX0022526 @ hg19
Exon Skipping
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97515673-97583121:+
Coord C1 exon
chr10:97515673-97516012
Coord A exon
chr10:97570390-97570563
Coord C2 exon
chr10:97582994-97583121
Length
174 bp
Sequences
Splice sites
3' ss Seq
CATATTCCTTCTTCACTCAGGTA
3' ss Score
8.76
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGGGAAGAAGGGAGAAAGAGAGAGAGATTTGAATATACATTGCTTCAAGGATGCAAAAAATTACAACCTGGAAAAGGCTTCGAGTAACTTTAGGAAAATGAGCTGCTGGACTCCTCAGTCAATCTGTCCTTTCTAGTCAATGAAAAAGACAGGGTTTGAGGTTCCTTCCGAAACGGGGCCGGCTAATTTAGCCCCTCCCACGAGCCCAAGGGTCTGTTATATCTCTGTTTCCTTGAGGACCTCTCTCACGGAGACGGACCACAGCAAGCAGAGGCTGGGGGGGGGAAAGACGAGGAAAGAGGAGGAAAACAAAAGCTGCTACTTATGGAAGATACAAAGG
Seq A exon
GTACAAAATTCAGTAGGACACGACTTTCTGAGTCATATGCTGGATTTGAGGAGATACTGAAGCCACAAGACTGAAATAACTTTTAAACTGTGGGTGATTTGGCTAAAAGCTACTCTCATCTATTATATATTCATCTTACTAGTTTTGCTCTCAGAGGAAGTTCCTGTTTCCAAG
Seq C2 exon
AGTCTAACGTGAAGACATTTTGCTCCAAGAATATCCTAGCCATCCTTGGCTTCTCCTCTATCATAGCTGTGATAGCTTTGCTTGCTGTGGGGTTGACCCAGAACAAAGCATTGCCAGAAAACGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-'3-8,'3-5,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.583 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0115012=GDA1_CD39=PU(1.9=18.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCCCAAGGGTCTGTTAT
R:
TGGCAATGCTTTGTTCTGGGT
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)