HsaEX0023066 @ hg38
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20803603-20806473:-
Coord C1 exon
chr16:20806408-20806473
Coord A exon
chr16:20805715-20805945
Coord C2 exon
chr16:20803603-20803670
Length
231 bp
Sequences
Splice sites
3' ss Seq
GCCATTTTTACTTCCTGCAGAAA
3' ss Score
8.82
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CGACTTCCGGCAGCTGGACTTGGAAAAGCAAGGAGTGTCGGGAATGGCGACCAAGCGGCTCGCGCG
Seq A exon
AAAGGGTACACTCGCCAGCAGTTTTGCCAGGAGAGTACACTGAACAAAGGAGACAGGGTCATTTATAACGTGGCGCGTCCACCCTACTGCTGTGTCCGGTTTCCTTTGGCTGGAACGGGACCTCACATTCTGTATTTGTCCCGACTGACTAGCAACATAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGAACAAAGGAAGAAGGAAGTAACTTGTGGAATGCTGAGAAAG
Seq C2 exon
GCAGCTTGGATTAATTAGGAGAAAGTCAATTGCGCCAGCAAATGGAAATCTCGGAAGAAGCAAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'6-19,'6-17,10-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGGCAGCTGGACTT
R:
TGGATTTGCTTCTTCCGAGAT
Band lengths:
133-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development