HsaEX0023907 @ hg19
Exon Skipping
Gene
ENSG00000196814 | FAM125B
Description
family with sequence similarity 125, member B [Source:HGNC Symbol;Acc:23368]
Coordinates
chr9:129143343-129148937:+
Coord C1 exon
chr9:129143343-129143450
Coord A exon
chr9:129147699-129147863
Coord C2 exon
chr9:129148841-129148937
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTCCCTGCTTGGCTTTCAGAGA
3' ss Score
9.07
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GTTGCACAGACAGCAGATGGTGTGGATGCTGACCTCTGGAAAGACGGCTTATTTAAATCCAAGGTTACCAGATACCTGTGTTTCACAAGATCATTTTCCAAAGAAAAT
Seq A exon
AGACGTGACACAGTGCAGGTGGAGGTGGGATCTTGGCTCCCATGTGCAGAGATGGAGGTAGCAGCCCTTCTTCTCTAAGCAAGATGGAACAACAGCCTGAGAAGTTGCTGTCCAGGGCAGAGTGATGGCTGACCAACTAGATGCTTGTCCAAGGATGCTGAACAA
Seq C2 exon
AGTCATCTGGGGAACGTGTTAGTAGATATGAAGCTCATTGACATCAAGGACACACTGCCTGTGGGCTTCATCCCAATTCAGGAGACGGTGGACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196814-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.028 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(13.9=100)
A:
PF102404=DUF2464=PD(13.4=34.6)
C2:
PF102404=DUF2464=FE(12.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCACAGACAGCAGATGGT
R:
TGTGTCCACCGTCTCCTGAAT
Band lengths:
204-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)