HsaEX0024872 @ hg38
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162194701-162198881:-
Coord C1 exon
chr2:162198757-162198881
Coord A exon
chr2:162197570-162197740
Coord C2 exon
chr2:162194701-162194748
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTTGATATCCCTATTCAGTTG
3' ss Score
6.38
5' ss Seq
GATGTCAGT
5' ss Score
1.36
Exon sequences
Seq C1 exon
AATTAGCATTGGAAGCTATCCTCCAAGCAAGAAGTGTGTTACTTGCCATCTAAGGAAAGAAAGGTGCCAATATTACACAGCAAGTTTCAGCGACTACGCCAAGTACTATGCACTTGTCTGCTACG
Seq A exon
TTGCAGAGGCCCTGAAGATCTCATAAAGGGAACCAGAATGAAGGCTACCCTAACATGCCACTTCCCTCAGTCCAGCCACCTGGCCCCGGAACCTGAGCTGCAGCTCATTTGACTACGTGGACATGAATAAGCATTTTAACCCAAATTCTCCCTTGAAGATAGCACAAAGAT
Seq C2 exon
GCCCAGGCATCCCCATTTCCACCCTTCATGATGGACGCACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098_MULTIEX4-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTATCCTCCAAGCAAGA
R:
TTGATCAGTGCGTCCATCATGA
Band lengths:
162-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development