HsaEX0025713 @ hg19
Exon Skipping
Gene
ENSG00000104760 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:3695]
Coordinates
chr8:17743001-17753026:-
Coord C1 exon
chr8:17752956-17753026
Coord A exon
chr8:17749190-17749316
Coord C2 exon
chr8:17743001-17743080
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTGTTGCTGGAAGGGT
3' ss Score
3.61
5' ss Seq
CAGGTTTAC
5' ss Score
1.74
Exon sequences
Seq C1 exon
TTACAGGATCCTGGGAAGCAGAGTGTCTGGATGGAACCTGAGCTGGGTCTCTGACTCACTTCTGACTTTAG
Seq A exon
GGTGAAGATGGAGGGAATCTGATAAAGACATCTTATAAATTCAACAGACACAAAAGAATTTGATCTCCCATAAGCAACTGTGAAATTACAATAACAGATCCTGGGAAGTTCTACAATTCTAATTCAG
Seq C2 exon
TTTTTTCAAGGGGGAACATGGCAAAGGTGTTCAGTTTCATCCTTGTTACCACCGCTCTGACAATGGGCAGGGAAATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCCTGGGAAGCAGAGTG
R:
CGAAATTTCCCTGCCCATTGT
Band lengths:
147-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)