HsaEX0025788 @ hg19
Exon Skipping
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:25922]
Coordinates
chr9:133804954-133814035:-
Coord C1 exon
chr9:133813923-133814035
Coord A exon
chr9:133806160-133806183
Coord C2 exon
chr9:133804954-133805433
Length
24 bp
Sequences
Splice sites
3' ss Seq
TATATTGCTCTGTTTTACAGGCG
3' ss Score
9.33
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CGGCGCGCCTCGCCCGGCGCCCCCGCCAGTCCTGCCGGAAGATGGTCAACGACCGGTGGAAGACCATGGGCGGCGCTGCCCAACTTGAGGACCGGCCGCGCGACAAGCCGCAG
Seq A exon
GCGAGGAAACTGAGGCTCAGAGAG
Seq C2 exon
CGGCCGAGCTGCGGCTACGTGCTGTGCACCGTGCTGCTGGCCCTGGCTGTGCTGCTGGCTGTAGCTGTCACCGGTGCCGTGCTCTTCCTGAACCACGCCCACGCGCCGGGCACGGCGCCCCCACCTGTCGTCAGCACTGGGGCTGCCAGCGCCAACAGCGCCCTGGTCACTGTGGAAAGGGCGGACAGCTCGCACCTCAGCATCCTCATTGACCCGCGCTGCCCCGACCTCACCGACAGCTTCGCACGCCTGGAGAGCGCCCAGGCCTCGGTGCTGCAGGCGCTGACAGAGCACCAGGCCCAGCCACGGCTGGTGGGCGACCAGGAGCAGGAGCTGCTGGACACGCTGGCCGACCAGCTGCCCCGGCTGCTGGCCCGAGCCTCAGAGCTGCAGACGGAGTGCATGGGGCTGCGGAAGGGGCATGGCACGCTGGGCCAGGGCCTCAGCGCCCTGCAGAGTGAGCAGGGCCGCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.500 C2=0.210
Domain overlap (PFAM):
C1:
PF100994=RskA=PU(19.1=75.0)
A:
PF100994=RskA=FE(6.9=100)
C2:
PF119323=DUF3450=PU(69.2=60.1),PF104734=CENP-F_leu_zip=PU(66.3=39.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCAACTTGAGGACC
R:
GTGACAGCTACAGCCAGCAG
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)