HsaEX0025803 @ hg38
Exon Skipping
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr7:50447968-50449723:-
Coord C1 exon
chr7:50449563-50449723
Coord A exon
chr7:50448181-50448289
Coord C2 exon
chr7:50447968-50448055
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTTCAATCTGTGACCTAGGAT
3' ss Score
6.88
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGAAAACCGGCAGAAAGACATTAAGAGATTTTCCTGCAGTCACTGCTGGCAGATGATAGAGCCAGGATTTGAAAGCAGGCAGCCTGGCTCCAGACCCTGTGCTCTTAACTCCCGTTTTGCATCAAGAACAGAATCCTATGAAAGGCTTGCACAGTGCTTG
Seq A exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
Seq C2 exon
ATAAGAAAACTGAAGAACCAGCTGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436-'5-17,'5-15,13-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAACCGGCAGAAAGACA
R:
GTAATCCACCCGCCTCAGC
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development