HsaEX0026109 @ hg19
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:17069]
Coordinates
chr9:132757122-132805441:-
Coord C1 exon
chr9:132805231-132805441
Coord A exon
chr9:132761213-132761338
Coord C2 exon
chr9:132757122-132757237
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGAATTTTCTTCTAGCTG
3' ss Score
8.33
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
Exon sequences
Seq C1 exon
GCTGTGGAGCGGCGGGGAGGAGGAGCCGCCGAGGAGACCCCGGGCGAGGAGCTGCGAGCCGGAGGAGGCCGCGCGGACTCCGGGCTTTCCGCCGTCGCGGGGATCTCGGGGGGCAAAGGGATCGCCGGGGAGGGGGACCAGAGAGCCGCGCCCGCCGCGCGGAGCGCCCCTTCGCGTCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGG
Seq A exon
CTGCTGTCAAGTCAGTGCTGCAGCAGTTCATGTGATAGTGAGAGCGTGGGGGCATCCTCAGGTTTCACAGAGCATCAAAAGAACTCTGCTATAGTCACAAACAAGCACCAGCTCATTTGTTACTGA
Seq C2 exon
GATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATATATCAAGTTTGTGAAAGAAAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(7.4=87.5)
A:
NO
C2:
PF0061118=FCH=PU(12.7=77.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGATCGCCGGGGAG
R:
TGAGTTGCTTTGCATAGCTGAGT
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)