HsaEX0026117 @ hg38
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129908890-129924026:-
Coord C1 exon
chr9:129923844-129924026
Coord A exon
chr9:129918911-129919242
Coord C2 exon
chr9:129908890-129908999
Length
332 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCTGGTTATTGGCAGACT
3' ss Score
4.87
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCCCCTCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGG
Seq A exon
ACTCAGTCTTTCTGTTTTCACAAAGAACTCATGAAGAGGACGATAGGGAAACCCACGTATGCCTTTGAGGCTAGGGACTATGTTGTAAGTTCACCTGTGATGGCCAGGTCATACAGTCATGGCACAGCCACTAACCCCATTCACAGCACCAAGACTGGGGACCCAGAGGCACTTGTTATGCTTCCACACTACGAAATGAAATTCTTAATTGAGAGAACTGGACACCAGGAAAAAAAAAAAAAAAGAAAAGCCTAATTGTATAAATTCAACCATACGGAACTTTATCCGAAAAGCTTGCATGAATAAAGGAAGCAAACTTTCTAATAACAGTG
Seq C2 exon
GGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239_MULTIEX1-5/10=3-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.744 A=0.429 C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154561=Uds1=PU(37.1=89.2),PF0218511=HR1=PU(25.4=43.2)
Main Inclusion Isoform:
ENST00000355681fB2784
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCTTTTAACATCCCCC
R:
TGATCCATCTCCTTCTGAATTTCT
Band lengths:
287-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development