HsaEX0027016 @ hg19
Exon Skipping
Gene
ENSG00000165219 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:23375]
Coordinates
chr9:128024111-128061385:+
Coord C1 exon
chr9:128024111-128024238
Coord A exon
chr9:128025830-128025979
Coord C2 exon
chr9:128061169-128061385
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTGGTTGTAAGTTT
3' ss Score
5.5
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AAGCCAACAGGCGAGTGGCGAAGGTGGCGGCAGCGGCGGCGGGGGCAGTCACCGGCTAGGGCGACGGCTCCGAGGCCGAGTGGCGGTCCGACAGAGTCCTCCGTGTCCTCCCCCGCATGACCCCCTTG
Seq A exon
TTTATTCAATGCAAAAGAATCCTCTCCAATTTTACTGAGGTGGCTGACCACGTCCACGACCAAATCCGTCTCAACTGGAATTTGGCTGCTGACCCAGCCCCAGCCTCAGCTTTCTTGTCGGCACTAAGTGGCACAGCACTCCATCTGTAG
Seq C2 exon
TGATCAGCCTTTGAGCCTTTCCCACATTGAAGATGGTGAAACTAGATATTCATACTCTGGCTCATCACCTCAAGCAGGAACGCTTATATGTAAACTCTGAGAAACAGCTCATTCAGAGGCTCAATGCAGATGTACTTAAGACAGCTGAAAAGTTGTATCGTACAGCATGGATTGCGAAGCAACAGAGAATCAATTTGGATCGGCTTATCATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165219_MULTIEX2-1/4=C1-C2
Average complexity
ME(1-3[95=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGTCCTCCGTGTCCTC
R:
AGCCGATCCAAATTGATTCTCTGT
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)