HsaEX0027703 @ hg19
Exon Skipping
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17667370-17670230:+
Coord C1 exon
chr19:17667370-17667488
Coord A exon
chr19:17668156-17668253
Coord C2 exon
chr19:17670120-17670230
Length
98 bp
Sequences
Splice sites
3' ss Seq
AATCTTGCTCTGTCGCCCAGGCT
3' ss Score
4.6
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGAGCTCTGAAGAAACCTTTGACTGGTGACTTCTCACTCCCTGCCTCAGTTTTCTCAAATGGAAAATGGGTCCGGGTGCAGTGGCTCACGCAGTAATCCTAGCAATTTGGGAGGCCAAG
Seq A exon
GCTGGAGTACAGTGACACGATCTCAGCTCATTGCAACCTCCGCCTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTTGGGATTACAG
Seq C2 exon
GGTGGCTACGGACCACAACATGGATAACACGTCAACTGTGCTGCGGGAGTGGCTGGTGGCCGTGAAGAGTTTGTACCATTCCGTGGAGTGGCGGCCAGCAGAGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-'1-3,'1-2,2-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PU(34.1=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTCACTCCCTGCCTCA
R:
TACAAACTCTTCACGGCCACC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)