HsaEX0027705 @ hg19
Exon Skipping
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17679318-17683411:+
Coord C1 exon
chr19:17679318-17679522
Coord A exon
chr19:17682679-17682800
Coord C2 exon
chr19:17683292-17683411
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTGTTTTTGAGACAGGGC
3' ss Score
1.76
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GGCTACTACAAGCGCACACCTGCCTACATCCCTATCCGCAAGCGAGACCGCCGGGGCTGCTTTGCAGTTCCCATGGTGCACTCGACCTTCCTGATCGACCTGCGGAAGGCGGCGTCCAGGAACCTGGCCTTCTACCCACCTCACCCTGACTACACCTGGTCCTTTGACGACATCATCGTCTTTGCCTTCTCCTGCAAGCAGGCAG
Seq A exon
GGCCTTGCCCTGTTGCCTAAGCTGGAGTGCAGTGTGCCATCATAGCTCATGGCAGCCTCAAGTCTCCTGGGCTCAAGTGATCCTCCTGCCACAGCCTCCCGAGGAGCTGGGACCATAGGCAG
Seq C2 exon
AGGTTCAGATGTATGTGTGCAACAAGGAGGAGTACGGATTCTTGCCAGTGCCATTGCGCGCCCACAGCACCCTCCAGGATGAGGCCGAGAGCTTCATGCATGTGCAGCTGGAGGTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-'6-9,'6-8,7-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTACATCCCTATCCGCAA
R:
GCAATGGCACTGGCAAGAATC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)