HsaEX0027990 @ hg19
Exon Skipping
Gene
ENSG00000215252 | GOLGA8B
Description
golgin A8 family, member B [Source:HGNC Symbol;Acc:31973]
Coordinates
chr15:34845946-34875061:-
Coord C1 exon
chr15:34874951-34875061
Coord A exon
chr15:34867026-34867115
Coord C2 exon
chr15:34845946-34846157
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGGCCCTCTTCCCCTTTCAGGTG
3' ss Score
12.1
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGGCACTGCCTGGCAAGGCTGCTGGAGGGAGATCTGGCCGCAGATGGTGAAGGAGAACATCGAGGCCCCCAGTCCCCAAGCAGGGCTCCATGGGTCGGGCGGCGGGCATTG
Seq A exon
GTGGAGGGAGCTGTTCATCCTCTGGGGGCTGCTGGGCAAGAAACATTTCTTACCTGATAATGTGAAGCGTCAGAGGTCCCTGTTTTATGG
Seq C2 exon
CTCTACTGAGATGAAGAAAGAAAAAGAATACCTGCTCAGCTCCAGAGACACGTAAAGGGACAGAGATTGGGGGACAGAAGGAAGTGCATTAATTCCTTCCACGACCCCTGAAGAGCAGCGGTGGGTCTGAGCATCCTATCTCCAGGAAGCAGGCCAGCAGGCAAGCCAGCTGCCACCTCGTCCTGTGCAAAGCACAGGCACCGTCCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215252-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGAGAACATCGAGGCC
R:
TCAGGGGTCGTGGAAGGAATT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)