HsaEX0028231 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132869775-132887243:+
Coord C1 exon
chr9:132869775-132869818
Coord A exon
chr9:132872649-132872705
Coord C2 exon
chr9:132887194-132887243
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTTTTTTCCACCAGGTG
3' ss Score
11.79
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAAAG
Seq A exon
GTGACAGCATGGGACCTCTTCAGCAGAGAGCGAATCTAAGAGCAGGAAGTCGCATAG
Seq C2 exon
CTGCTATTAACTTAGCAAAGCTGAAACTTTTCAGACATTATTACGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.2=100)
A:
PF068148=Lung_7-TM_R=PD(1.3=15.0),PF068148=Lung_7-TM_R=PU(10.3=40.0)
C2:
PF068148=Lung_7-TM_R=FE(20.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATCAGACATTTACAAGAAGCA
R:
TGAAAAGTTTCAGCTTTGCTAAGT
Band lengths:
77-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)