HsaEX0028332 @ hg38
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174429478-174515453:-
Coord C1 exon
chr2:174515423-174515453
Coord A exon
chr2:174483010-174483158
Coord C2 exon
chr2:174429478-174434735
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCGTGTATGCCAGGTA
3' ss Score
9.31
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
CTCCTGGGTTCAAGCAATTCTCTGCGTCAGC
Seq A exon
GTACTGTCCTAGATGTTAAGGACACAACATTGAGCAAAAACATGCATAGTCCCTGCTTCCGTGACACTTGAGTGAACTGAATGTGCAAAGTCCCTGTGGCACAAAGTCCCTGGGGCCAGTGTGTGTGGCGGGTGTAGAAGGAGCTAAAG
Seq C2 exon
TACTTTGGAGACTGAGGTGGGAGTACCCCTTGAGCCTGGGAGGCGCAGGTTGCAGTGAACCAAGATCACATCACTGCACTTCAACCTGGGTGACAGAGCAAGACCCTGTCTCAAAAACAAAAAACAAGCAAAAAAAACCTAGAGGCACTATTTTTTTTTAAAGTTTGTCTTTTCTTTTCTACCCAAATTACTAATCTATGCCATTAAGGAAAGGAATAAGAACCTCCATATGTATTATTATCTCCACAGTCCTGCAGAAGTACAATCTGATCTTTAACTTTCATGCTACAAATAATAATTTGAGTAGATTAATTTGAATTTTATCAACAAAATTATTGCCATATGATGTATCATTTCTGTGTTTGAACAAAGCATCGTAATGCAGGATAACTTCTACTTTATTCCCTGTAGTTAAAAAAAAAAAAACTATATAGTTCAAGCCAATATTTAAAAATTCTAAACCTAGGCTGGGCATGGTGACTCATACCTGTAATCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328_MULTIEX1-1/19=C1-C2
Average complexity
C3
Mappability confidence:
95%=100=95%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTCAAGCAATTCTCTGC
R:
TGGAGGTTCTTATTCCTTTCCTT
Band lengths:
255-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development