HsaEX0028836 @ hg19
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:4620]
Coordinates
chr9:124043748-124064445:+
Coord C1 exon
chr9:124043748-124043840
Coord A exon
chr9:124044153-124044231
Coord C2 exon
chr9:124064241-124064445
Length
79 bp
Sequences
Splice sites
3' ss Seq
GAGTTGCTTTCCCTCTCAAGGCC
3' ss Score
6.47
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTAGTGCTCATAGCTCTCTTTGTCCAGTGCTTCGGCCTTGGTCCCAGCGCCTTCCCACGGAGCAGCACTCTTCACCCTGCACAGCCTTGTTAG
Seq A exon
GCCTTGGTTGCTATTCTGTAGAAGAGCAGAGTCCCCATAAAGAGGAGGTGCAGGAATTCTTCCCAGAGGCTTTGGAGAG
Seq C2 exon
CCCAACAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCACCAACCTTTATGGAGACTTCTTCACGGGCGACGCCTACGTCATCCTGAAGACAGTGCAGCTGAGGAACGGAAATCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180_MULTIEX1-1/8=C1-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGCACAGCCTTGTTAG
R:
GTCTTCAGGATGACGTAGGCG
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)