HsaEX0028839 @ hg19
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:4620]
Coordinates
chr9:124043748-124064445:+
Coord C1 exon
chr9:124043748-124043840
Coord A exon
chr9:124048880-124049039
Coord C2 exon
chr9:124064241-124064445
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTTTGTGCTCCCAGGGC
3' ss Score
10.51
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTAGTGCTCATAGCTCTCTTTGTCCAGTGCTTCGGCCTTGGTCCCAGCGCCTTCCCACGGAGCAGCACTCTTCACCCTGCACAGCCTTGTTAG
Seq A exon
GGCCCACAACTGCTTGAATGACTATTGGTGTTCCTGTTTGTGTGCCCTCTGGGCCGGGAAGTCAGAGAAAGAAAGGAGACAATTTGTGATTGAACAGCCACTGTGGCCATCATTCTCCTTACCTGTCTGATGAGAGCTGATCTTCATGCCACTGTGTACA
Seq C2 exon
CCCAACAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCACCAACCTTTATGGAGACTTCTTCACGGGCGACGCCTACGTCATCCTGAAGACAGTGCAGCTGAGGAACGGAAATCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180_MULTIEX1-4/8=C1-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0062617=Gelsolin=PU(50.0=63.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTTGTCCAGTGCTTCGG
R:
GATTTCCGTTCCTCAGCTGCA
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)