HsaEX0029014 @ hg19
Exon Skipping
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:4668]
Coordinates
chr9:135930099-135931481:+
Coord C1 exon
chr9:135930099-135930196
Coord A exon
chr9:135930331-135930351
Coord C2 exon
chr9:135931399-135931481
Length
21 bp
Sequences
Splice sites
3' ss Seq
GGCACCTTGCTTCCTTTTAGGTC
3' ss Score
9.94
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CCAGCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTGGGCCCGTCGGGGACGAGTGGTGCTCGGAAACCAGCTTCCAGCAAGTACAAGCTCAAG
Seq A exon
GTCAGCCTTCAGACACTGAGG
Seq C2 exon
GACTCTGTCTACATCTTCCGGGAAGGGGCCTTGCCACCCTATCGGCAGATGTTCTACCAGTTATGCGACTTGAATGTGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGCATGACCTGAAGCAG
R:
CCCCTTCCCGGAAGATGTAGA
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)