HsaEX0029062 @ hg38
Exon Skipping
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr12:54465067-54471277:-
Coord C1 exon
chr12:54471233-54471277
Coord A exon
chr12:54468825-54468953
Coord C2 exon
chr12:54465067-54465167
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCTTCGTTACTTTTTTCAGCCA
3' ss Score
6.96
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CACTTGGATTCAGCTTCTTCATTTCCAACATGGAAGAAACTTACA
Seq A exon
CCACATTTTTTTTTTCTTAAATATCACCTGGGAGTGTGTTGGAAATGGACAATCTCAGCGCTCATCCCAGACCTACTGAATCAGAATCAGCACTTTAACACAGTCCCTAAGTGATGTAACACCTGGAGA
Seq C2 exon
CCGACTCCCTGGACCCTGAGAAGCTATTGCAATGCCCCTATGACAAAAACCATCAAATCAGGGCTTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627_MULTIEX2-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF052537=zf-U11-48K=WD(100=79.4)
Main Inclusion Isoform:
ENST00000305879fB3111
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCAGCTTCTTCATTTCCA
R:
TCTGCACTTGATAAGATGATAAGGA
Band lengths:
139-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development