HsaEX0029668 @ hg19
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65163579-65175042:-
Coord C1 exon
chr17:65174775-65175042
Coord A exon
chr17:65169119-65169199
Coord C2 exon
chr17:65163579-65163912
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATTTTATTTTATTTCTTAGCAC
3' ss Score
7.06
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
Exon sequences
Seq C1 exon
ATCTCGAATACCTGATGCATGCAAAACAGCAGCTAGTAACCACAGCTAAACGTTGGGATTCTTCCTCTAAGACTATTATAGATTTTGAACCTAATGAAACTACTGATTTGGAGAAGAGCCTTCTTATCAGATACCAAATTCCCCTCTCTGCTGACCAGCTATTTACTCAGTCCGTTTTAGACAAATCATTGACCAAGAGCAACTATCAGTCACGGTTACATGACCTTCTTTATATTGAGGAGATAGCCCAGTATAAAGAAATCAGCAA
Seq A exon
CACTTCTGGTGCCTCTACCTCAAGAATTTTGTTGCAAGACACAACCAATGTCACAAGAGGATTCTCTTGTTGCTCTAAACT
Seq C2 exon
GTTCAACCTTAAAGTGCAATTGCAGATTCTGGCAAGCTTCATGCTCACTGGTGTTTCTGGAGGTGCAAAGTATGCTCAGAATGGACAACTTTTTGGTCGCTTTAAGCTTACTGAAACACTTTCTGAAGATACTTTGGCTGGACGACTGGTGATGACCAAAGTCAATGCTGTTTATTTATTACCAGTCCCTAAACAGAAGTTAGTACAGACCCAGGGAACCAAAGAGAAGGTTTATGAAGCTACTATTGAAGAAAAAACAAAGGAATATATATTTTTAAGGCTATCTAGGGAATGCTGTGAAGAACTTAATCTTCGGCCTGACTGTGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-'16-18,'16-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCCCCTCTCTGCTGACCA
R:
TGAAGCTTGCCAGAATCTGCA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)