HsaEX0030053 @ hg19
Exon Skipping
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:4920]
Coordinates
chr6:12015759-12089470:+
Coord C1 exon
chr6:12015759-12015901
Coord A exon
chr6:12020481-12020651
Coord C2 exon
chr6:12089417-12089470
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTTTCCCATCTGCAGGAA
3' ss Score
11.82
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CACATGGATTAATTGATGTATGTTGAGTTTATGGAGCTGCCTTTTGGTGGCTTGCTTTATCTGCAGTTTTTAAGAAGAAAAAGAAGGCCCTGAGTCAAAGAAGATGCCTCGAACTAAACAAATTCATCCCAGAAATCTAAGAG
Seq A exon
GAAACGTGGTGGGTGCCGTTTTGACACCGACCTATCCTTTGTGAGGTTGAAGAATTTTGGAAGAGCATGAGAGCAGCACTTGGTGTTCAGAAGAAAGGCTTAGCATGTTGTCCTGGGTTCCGTGGAGAAGGGTCACTGGACTGCACGGGGTGGCTCTTCCGCATGGTCTTG
Seq C2 exon
ACAAAATTGAAGAAGCACAAAAAGAACTTAATGGGGCAGAAGTTTCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.226 C2=0.864
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGTTGAGTTTATGGAGCTGCC
R:
TTTTTGAAACTTCTGCCCCATT
Band lengths:
178-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)