HsaEX0030059 @ hg38
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr6:142776147-142783615:-
Coord C1 exon
chr6:142783521-142783615
Coord A exon
chr6:142779495-142779592
Coord C2 exon
chr6:142776147-142776191
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGTCTCACTCTTTTCCCCAGGCT
3' ss Score
7.29
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATTCCCAGAAGTTGTGCATGAGTTCCTGTGAGGAGAGTTGGCATCTTGGAAATCAAAGACGGTTGTGATGCAGTTTTTTGATATGAGGATAACAG
Seq A exon
GCTGGAGTGCAGTGCTGCAATCATAGCTCACTGCAGCCTCGACCTGCTGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGCAGCTGAGACTACAG
Seq C2 exon
GAAGCGTCAGGACAATCATGCCCATAAGAACTCTAAACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818_MULTIEX2-8/11=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAAGTTGTGCATGAGT
R:
TGAACAGTTTAGAGTTCTTATGGGCA
Band lengths:
137-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development