HsaEX0030061 @ hg19
Exon Skipping
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:42331219-42384378:-
Coord C1 exon
chr1:42384084-42384378
Coord A exon
chr1:42335218-42335301
Coord C2 exon
chr1:42331219-42331286
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCAAAAATTTACTTTATAGGAT
3' ss Score
7.96
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTCACAACCAGCCGACTCTCCCATTATCCAGCTGCCTAGTTTGGTGCTTCAATGTACATGGCTATTCCGTGTGCATATGTGTGTATACAAACACGCATGCATGCCTGGATGGACATACGTATGCACAGGTTATTTTTTAAGGACAATTCTTTCAATAAGGTCTTTACCCCTTACTTGAAACAGGTGTTCATGAAAAAAATGCACAAAATCCTGCCTGGCCGGAATAATTCATGAAGAAGGGGCTGGATCCGTGGGTCAGAGAACACAGGACCAGTTTGCCATCCCAAGGCCGAAG
Seq A exon
GATTATAGAACACATGTGCTCCTTAAAGAAAAACACTGTGCAGGGAGATAACAGTCATCAAACATGGAAACCTTTGAGTTGAAT
Seq C2 exon
AGCTCATCCAGTTTCCCCACATTATTTCCAGTGGAGGACCCAGCACTCAGAGACGCCCTTCTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-'1-6,'1-5,3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTTACTTGAAACAGGTGT
R:
GCTGGGTCCTCCACTGGAAAT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)