HsaEX0030077 @ hg19
Exon Skipping
Gene
ENSG00000159399 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:4923]
Coordinates
chr2:75062297-75081582:+
Coord C1 exon
chr2:75062297-75062465
Coord A exon
chr2:75078164-75078425
Coord C2 exon
chr2:75081420-75081582
Length
262 bp
Sequences
Splice sites
3' ss Seq
TTTCATATCTTCTCTCTTAGTCT
3' ss Score
8.04
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACCCGGGAAGGAGTAGGAAAGGGGCAGAGGAACTCCGCCCGCCGCGCCCCCTCCCCGGAACTGTGGCGCCCGGAACTGAGGCTCGGCGAGGGGCGTCCCCCATTAACCCCCGCCCCTCCAAATCAGCCTCGGGACCGCCCAGCCTCGTGTCCTCAGGATCTGCCTCTGA
Seq A exon
TCTCCTCATGTGATGGAGAGGAAAATAAGGTCCCAGGGTCATCCAAGAAACCACAGGGCAGGCTGGGAGTGCCCATCCACACTAAGAGGGGCCCACAGGACAGGCGAGGGTGGCTGTCCTGACGGCCTGGCAGTGGGGCCAGACAGACCTCTGTGGAATCCCATCTCTGCCCCTCATTACCCAAGTGATCTATAAAACGGAGGTGCAGAAGTTTTACGAAGACAATGGAGAACAGGTCAGGAAAGCCGGAAGTGCCTGACAG
Seq C2 exon
GTTGACCAGTATCTCTACCACATGCGCCTCTCTGATGAGACCCTCTTGGAGATCTCTAAGCGGTTCCGCAAGGAGATGGAGAAAGGGCTTGGAGCCACCACTCACCCTACTGCAGCAGTGAAGATGCTGCCCACCTTTGTGAGGTCCACTCCAGATGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159399-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.040
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0034916=Hexokinase_1=PU(24.4=97.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGGGAAGGAGTAGGAAAG
R:
CTTCACTGCTGCAGTAGGGTG
Band lengths:
292-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)