HsaEX0030083 @ hg38
Exon Skipping
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69261139-69265818:+
Coord C1 exon
chr10:69261139-69261294
Coord A exon
chr10:69262058-69262188
Coord C2 exon
chr10:69265585-69265818
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTCTTTCTTTTAGGAT
3' ss Score
14.14
5' ss Seq
GGTGTAATT
5' ss Score
-0.75
Exon sequences
Seq C1 exon
ATACGAGAAAATGACCAGTGGGATGTACTTGGGGGAGATTGTGCGGCAGATCCTGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGGCAGATTTCAGAGCGTCTCCGGACCAGGGGCATCTTCGAAACCAAGTTCCTGTCCCAGATCGAAAG
Seq A exon
GATGTTATCAGTCATTGATGCATATTGCCTGGATCTATTATTTCACTAGACATCGTAAATGGTGATGATTCCTGCAGTTATTAGCTGGAATACTTCTAGAAAGAGGAACTTTCCCCTATCAACTCTTTGGT
Seq C2 exon
CGATCGGCTGGCCCTTCTCCAGGTCAGGAGGATTCTGCAGCAGCTGGGCCTGGACAGCACGTGTGAGGACAGCATCGTGGTGAAGGAGGTGTGCGGAGCCGTGTCCCGGCGGGCGGCCCAGCTCTGCGGTGCTGGCCTGGCCGCTATAGTGGAAAAAAGGAGAGAAGACCAGGGGCTAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCACCCTGTACAAGCTGCACCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=PD(4.7=35.3)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
ENST00000354624fB3215
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCAGAGCGTCTCCGGA
R:
TGATCCTCAGGTGCTCTAGCC
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development