HsaEX0030119 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr6:30009145-30009957:+
Coord C1 exon
chr6:30009145-30009177
Coord A exon
chr6:30009320-30009367
Coord C2 exon
chr6:30009535-30009957
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGTTCTACCCCAGGCA
3' ss Score
9.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAA
Seq A exon
GCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAG
Seq C2 exon
TGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGATTTGTTCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCTGCAAAGGCATCTGAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCCACCATGACCCTGTTCCCCACACTGACCTACATTCCTTCCCCGATCACCTTTCCTGTTCCAGAGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCCATGACGGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
Hs.733071_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTACTCTCAGGCTGCAA
R:
TGCCTATAGGGACACAGACACA
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development