HsaEX0030120 @ hg19
Exon Skipping
Gene
ENSG00000243753 | HLA-L
Description
major histocompatibility complex, class I, L (pseudogene) [Source:HGNC Symbol;Acc:4970]
Coordinates
chr6:30229364-30260791:+
Coord C1 exon
chr6:30229364-30229480
Coord A exon
chr6:30230072-30230119
Coord C2 exon
chr6:30260180-30260791
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTGTTCTACCCCAGGCA
3' ss Score
9.04
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCCGTCTTCTCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGTTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTTGCTGCTGCGATGTGGAGGAAGAAAAGCTCAG
Seq A exon
GCAGCAATTGTGCTCAGTACTCTGATGCATCTCATGATACTTGTAAAG
Seq C2 exon
AGTTCTCACCACCTCCTCCCAGGCTAAATCCTTCATGTTGCAGGAGACAGAGAATCCCAGGTGAGACCCGGACTTTTTCTCCTCCCTCCCTTCCTTTTTTCACCGTGTTCAGGATAAATTATCTTGGTTTTGTTTCTGGAGGGAAAAGGGCAGAGAGGCCCTGACTTGAATCTCAATCACATTTCTGCACACAGTACCTGAGGAGACAGAATAGCAGAGGGGTGGGAACAATTAACATTGCTTTATGGGCTTTAGAATGGAGAAAAAATAATTCCCACTCTTTTTTCTTTTACCCAAATCCAACTTCAGTTTTCTCTCCAACTCTCTAAAACCACCACCAATACTATTATCACATCATGTGTAGCTACTTGGGGGGTGGTGAAAGGCTGAGTACGCATCATGTTCAGGTAGTAGGGTGTTAAACGAAATAGTTCCTCACAGCAATGCCCAAAGTCATCCTTGGTCACAATAAAGGAGAATAAAGGGAAAAAAGTATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000243753_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTTGGAGCTGTGGTCA
R:
GGGTCTCACCTGGGATTCTCT
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)