HsaEX0032254 @ hg19
Exon Skipping
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20kDa [Source:HGNC Symbol;Acc:6130]
Coordinates
chr15:89178674-89182825:+
Coord C1 exon
chr15:89178674-89178931
Coord A exon
chr15:89179398-89179523
Coord C2 exon
chr15:89182574-89182825
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTATGGTCATTACAGGTG
3' ss Score
7.25
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAAATCACTTTTTCCATCTTACTGGGATACCAGATGTCCTGGATATGAACTGCTGAAGCGGGGATGGGTAGTGTCACACACGTTTTAAGCAGATACTTGCAGCGCTTGAGCTCACTACAGTAACAACAGGAAGTGGCTACATTAACAGCACACTGTGTACTATAGTTAATTTTATGCAGTTACGGTTTCAGACTGCATCCCGACATTGGTTTACATTTCTCTTGACTGAGAATGGTGCCACGTGTGGTCTGTAAGTAG
Seq A exon
GTGGTCAGCTGTAGCTGGATGTGTGCCTTGAAAGGCTGACAAGTTTGCCCTGAGTGACTCACCTACTGTCACCTGATCCAACAAGATTTGTGGGCGTAGCCTGCCGATGGGTGACGCCAGTTAAAG
Seq C2 exon
CATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTTGCCGTGGCCAGGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.039
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCATCCCGACATTGGTT
R:
ATCGGTGATCTCTCCCTCAGG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)