HsaEX0032431 @ hg38
Exon Skipping
Gene
ENSG00000150093 | ITGB1
Description
integrin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6153]
Coordinates
chr10:32935492-32958209:-
Coord C1 exon
chr10:32958145-32958209
Coord A exon
chr10:32953593-32953809
Coord C2 exon
chr10:32935492-32935558
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTAATTTATTTTCAGATA
3' ss Score
7.1
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGCGGGAGTCGCGGAACAGCAGGCCCGAGCCCACCGCGCCGGGCCCCGGACGCCGCGCGGAAAAG
Seq A exon
ATACCTGATCAGAGAAGCAGTTTGATGTACTAAAGGCTTCTCGATTGGGAGACAGGAAACCTGGGTGTCAGTGCCGGGTCTGCCACTGAATTTCTGTGTGACCTTTGTCAGAGTACTGTACTTCCAGAGCGTTGGTTTCCACATCTACCCTATAAAGCAGCCTGCATGTTTCTCTCATTCTCTCGTTCGAGGAGTTGGAGGATAGCTGCTGCCTGAT
Seq C2 exon
ATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGTTTGCTGTGTGTTTGCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150093_MULTIEX3-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0143720=PSI=PU(12.3=34.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development