HsaEX0032486 @ hg19
Exon Skipping
Gene
ENSG00000139626 | ITGB7
Description
integrin, beta 7 [Source:HGNC Symbol;Acc:6162]
Coordinates
chr12:53594027-53601000:-
Coord C1 exon
chr12:53600986-53601000
Coord A exon
chr12:53594856-53594978
Coord C2 exon
chr12:53594027-53594230
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAACTTCTCCACTTTGCAGATG
3' ss Score
9.85
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCTCTGCACGCACCT
Seq A exon
ATGTGGAAACTAAAGCCCAGAGAGAAAGTCTGACTTGCCCCACAGCCAGTGAGTGACTGCAGCAGCACCAGAATCTGGTCTGTTTCCTGTTTGGCTCTTCTACCACTACGGCTTGGGATCTCG
Seq C2 exon
GGCATGGTGGCTTTGCCAATGGTCCTTGTTTTGCTGCTGGTCCTGAGCAGAGGTGAGAGTGAATTGGACGCCAAGATCCCATCCACAGGGGATGCCACAGAATGGCGGAATCCTCACCTGTCCATGCTGGGGTCCTGCCAGCCAGCCCCCTCCTGCCAGAAGTGCATCCTCTCACACCCCAGCTGTGCATGGTGCAAGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139626_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.254
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0143720=PSI=PU(51.1=34.3),PF0036213=Integrin_beta=PU(42.5=25.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)