HsaEX0033011 @ hg19
Exon Skipping
Gene
ENSG00000151704 | KCNJ1
Description
potassium inwardly-rectifying channel, subfamily J, member 1 [Source:HGNC Symbol;Acc:6255]
Coordinates
chr11:128708639-128737268:-
Coord C1 exon
chr11:128737068-128737268
Coord A exon
chr11:128720616-128720785
Coord C2 exon
chr11:128708639-128710159
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTGTATTTTACCAGGTT
3' ss Score
8.64
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTGCATACAGATGAGTTGGCAGCCGGTCTGAGCTGGCCCACAGACTCATAAAATCAACAGGGCCTCGGGTACCCTCACCTAGCATATCCAAACTCTTGCATCAAAGGTGCAGGGACTTGCTCACATCGAGAATCTGGTTGCTTTCTTGGAGACCAAGAAAATGAGTTTTTGTTTCTACATTTACTCCAGCAATCCATGAG
Seq A exon
GTTTCTTCTCTACTGTGCCTTCATCCCCATCCTGGGCCCTGACAAAGACAGTGTGACAAGTTCTGAGCCCCACAGGTGGAATCCCAAACCAAGCAGCTCTTGCTGGTCACCCCAAGATCTACTTATACATGAAGTTTTGAAAATCATCTCCTGAACCTCTTCTGACAGAG
Seq C2 exon
ATCAGGGTGTTGACAGAAAGTATGTTCAAACATCTTCGGAAATGGGTCGTCACTCGCTTTTTTGGGCATTCTCGGCAAAGAGCAAGGCTAGTCTCCAAAGATGGAAGGTGCAACATAGAATTTGGCAATGTGGAGGCACAGTCAAGGTTTATATTCTTTGTGGACATCTGGACAACGGTACTTGACCTCAAGTGGAGATACAAAATGACCATTTTCATCACAGCCTTCTTGGGGAGTTGGTTTTTCTTTGGTCTCCTGTGGTATGCAGTAGCGTACATTCACAAAGACCTCCCGGAATTCCATCCTTCTGCCAATCACACTCCCTGTGTGGAGAATATTAATGGCTTGACCTCAGCTTTTCTGTTTTCTCTGGAGACTCAAGTGACCATTGGATATGGATTCAGGTGTGTGACAGAACAGTGTGCCACTGCCATTTTTCTGCTTATCTTTCAGTCTATACTTGGAGTTATAATCAATTCTTTCATGTGTGGGGCCATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151704_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCATCAAAGGTGCAGGGA
R:
TGTGCCTCCACATTGCCAAAT
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)