HsaEX0033017 @ hg19
Exon Skipping
Gene
ENSG00000157551 | KCNJ15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:HGNC Symbol;Acc:6261]
Coordinates
chr21:39529128-39668945:+
Coord C1 exon
chr21:39529128-39529179
Coord A exon
chr21:39628968-39629107
Coord C2 exon
chr21:39668848-39668945
Length
140 bp
Sequences
Splice sites
3' ss Seq
AACTTGTTTTTGACTGACAGTGA
3' ss Score
5.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGTCTTCAGAGGAAGGATAGCTGTACAGCGTGGTGAAGGACTCAATGAGAAG
Seq A exon
TGAACAGTGAGAGAGTTTTCTTCATTTTGAGGAACCCTAAACACCTATCTTTCCCAAGGCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
Seq C2 exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGAGTGAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGGAAGGATAGCTGTACA
R:
CTGGTCACTCACTCCGCAG
Band lengths:
146-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)