HsaEX0033019 @ hg19
Exon Skipping
Gene
ENSG00000153822 | KCNJ16
Description
potassium inwardly-rectifying channel, subfamily J, member 16 [Source:HGNC Symbol;Acc:6262]
Coordinates
chr17:68127020-68131744:+
Coord C1 exon
chr17:68127020-68127116
Coord A exon
chr17:68127494-68127621
Coord C2 exon
chr17:68128136-68131744
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTCTTTCAAGACT
3' ss Score
7.89
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTAACTCAAGATGATTTTGATGTTGCAGTTTTAAATTTCACTTTGACTTGAGCTGGGAAATCCTTTGGCCTATTATACCATGGATGCTAAAAATG
Seq A exon
ACTAAAGGTGGAGTTAGGGGGAAATGAGTTTAATGTGAAGTAGTACTCCTGTCAGTTCTGTTTGTCCTGGGAAGTATACAAGGAAGAAAAGCCTCCGTGGAAGAGAGAGCAAGCACCAGGTGCTGAAG
Seq C2 exon
GTTCTAACTGAAAACCCAAACCAAGAAATAGCAACAAGTCTAGAATTCTTACTACTACAAAACTCACCTGGATCCCTAAGGGCACAGCAAAGAATGAGCTATTACGGCAGCAGCTATCATATTATCAATGCGGACGCAAAATACCCAGGCTACCCGCCAGAGCACATTATAGCTGAGAAGAGAAGAGCAAGAAGACGATTACTTCACAAAGATGGCAGCTGTAATGTCTACTTCAAGCACATTTTTGGAGAATGGGGAAGCTATGTGGTTGACATCTTCACCACTCTTGTGGACACCAAGTGGCGCCATATGTTTGTGATATTTTCTTTATCTTATATTCTCTCGTGGTTGATATTTGGCTCTGTCTTTTGGCTCATAGCCTTTCATCATGGCGATCTATTAAATGATCCAGACATCACACCTTGTGTTGACAACGTCCATTCTTTCACAGGGGCCTTTTTGTTCTCCCTAGAGACCCAAACCACCATAGGATATGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153822_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0100715=IRK=WD(100=79.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGGAAATCCTTTGGC
R:
TCTTCTTGCTCTTCTCTTCTCAGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)