HsaEX0033121 @ hg19
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium channel, subfamily T, member 2 [Source:HGNC Symbol;Acc:18866]
Coordinates
chr1:196367693-196392243:-
Coord C1 exon
chr1:196392180-196392243
Coord A exon
chr1:196375089-196375271
Coord C2 exon
chr1:196367693-196367801
Length
183 bp
Sequences
Splice sites
3' ss Seq
AACCTTATACTTTTTAACAGTCT
3' ss Score
6.04
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GATGGATGACGCTGAGGCCTGTTTTATTCTCAGTAGCCGTTGTGAAGTGGATAGGACATCATCT
Seq A exon
TCTACATATTAGACCTGGATGTTCTAATTATGAACAAAATAGACCCTGACCTCAAGGTGCTTTTGAGTCCAATCTACTGTGAGGCCTTCCTAGGGCCATCTGTGAAGAAATTGTTCTCTGGGCAAGGATCACATTTGGCAAGAATTGTTTATACAACAATACATTCGAATGTTTTCAAGACAG
Seq C2 exon
GATCACCAAACAATTTTGAGAGCATGGGCTGTGAAAGATTTTGCTCCAAATTGTCCTTTGTATGTCCAGATATTAAAGCCTGAAAATAAATTTCACATCAAATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(17.9=27.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACGCTGAGGCCTGTTTT
R:
ATTTTCAGGCTTTAATATCTGGACAT
Band lengths:
147-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)